Difference between revisions of "Electronic properties of isolated molecules"

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===Exercise1===
 
===Exercise1===
[[File:guanine1.png|20px|thumb]]
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[[File:guanine1.png|40px|thumb]]
[[File:guanine2.png|20px|thumb]]
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[[File:guanine2.png|40px|thumb]]
 
'''Structural relaxation of the Guanine molecule'''
 
'''Structural relaxation of the Guanine molecule'''
  

Revision as of 12:55, 18 March 2021

Prev:LabQSM#Lecture 2: DFT simulations of Molecules

Exercise1

Guanine1.png
Guanine2.png

Structural relaxation of the Guanine molecule

  • Use a molecular builder to find the initial molecular structure. (Avogadro)
  • Classical Force Field Relaxation (using a built-in engine)
  • Quantum Mechanics Relaxation refinement (Quantum ESPRESSO) (thr=10^-3)
  • Use the xcrysden software to visualize the relaxation path.